Hallmarks_v2023_1_Hs_symbols

hallmarks

<p>A list with Human gene symbols from the MSigDB's Hallmark gene set 
collection (Liberzon et al., 2015). These gene sets are used to
demonstrate the PathwaySpace's summit mapping pipeline, which assigns 
summits to an image space.</p>

For a given graph containing vertices, edges, and a signal associated with the vertices, the 'PathwaySpace' package performs a convolution operation, which involves a weighted combination of neighboring vertices and their associated signals. The package then uses a decay function to project these signals, creating geodesic paths on a 2D-image space. 'PathwaySpace' could have various applications, such as visualizing and analyzing network data in a graphical format that highlights the relationships and signal strengths between vertices. It can be particularly useful for understanding the influence of signals through complex networks. By combining graph theory, signal processing, and visualization, the 'PathwaySpace' package provides a novel way of representing and analyzing graph data.

Mauro Castro

PathwaySpace

Spatial Projection of Network Signals along Geodesic Paths

Victor Apolonio

Vinicius Chagas

Hallmarks_v2023_1_Hs_symbols function

Format

A list with Hallmark gene sets (v2023.1). — Hallmarks_v2023_1_Hs_symbols

A list with Hallmark gene sets (v2023.1).

Hallmarks_v2023_1_Hs_symbols: A list with Hallmark gene sets (v2023.1).

Description

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Examples