Patterns (version 1.4)

clustExploration,omics_array-method: A function to explore a dataset and cluster its rows.

Description

Based on soft clustering performed by the Mfuzz package.

Usage

# S4 method for omics_array
clustExploration(omicsarray, new.window = FALSE)

Value

A data.frame of nrows(omicsarray) observations of 3 variables (name, cluster, maj.vote.index).

Arguments

omicsarray

A omicsarray to cluster

new.window

Boolean. New X11 window for plots. Defaults to FALSE.

Author

Bertrand Frederic, Myriam Maumy-Bertrand.

Examples

library(Patterns)
if(require(CascadeData)){
data(micro_S, package="CascadeData")
D<-Patterns::as.omics_array(micro_S[1:100,],1:4,6)
a<-clustExploration(D)
a
}