
  Empirical/kinship correlation matrix between individuals.
  This correlation matrix can be calculated based on the
  familial relationship between individuals or large-scale
  SNP data by omic data analysis toolkit FQLS. The free
  software FQLS can be downloaded from
  <a href="http://biostat.cau.ac.kr/fqls/">http://biostat.cau.ac.kr/fqls/</a>. If correlation
  matrix is estimated with the large-scale SNP data, the
  proposed method becomes robust under the presence of
  population substructure.


datasets

An implementation for association analysis with CNV data in R. It
provides two methods for association study: first, the observed probe
intensity measurement can be directly used to detect the association of CNV
with phenotypes of interest. Second, the most probable copy number is
estimated with the proposed likelihood and the association of the most
probable copy number with phenotype is tested. This method can be applied
to both the independent and correlated population.

phi: Empirical correlation matrix

Description

Arguments

References

Examples