Peptides (version 1.0.1)

H: 22 Hydrophobicity values for amino acids form ExPASy "protscale"

Description

A list with 22 hydrophobicity scales form ExPASy "protscale"

Usage

data(H)

format

A list with 22 Hydrophobicity scales.

source

ExPASy-Protscale (http://web.expasy.org/protscale/)

Details

Hydrophobicity scales are values that define relative hydrophobicity of amino acid residues.

References

Gasteiger, E., Hoogland, C., Gattiker, A., Wilkins, M. R., Appel, R. D., & Bairoch, A. (2005). Protein identification and analysis tools on the ExPASy server. In The proteomics protocols handbook (pp. 571-607). Humana Press.

Eisenberg D., Schwarz E., Komarony M., Wall R. Normalized consensus hydrophobicity scale. J. Mol. Biol. 179:125-142(1984).

Sweet R.M., Eisenberg D. Optimized matching hydrophobicity (OMH). J. Mol. Biol. 171:479-488(1983).

Hopp T.P., Woods K.R. Hydrophilicity. Proc. Natl. Acad. Sci. U.S.A. 78:3824-3828(1981).

Kyte J., Doolittle R.F. Hydropathicity. J. Mol. Biol. 157:105-132(1982).

Manavalan P., Ponnuswamy Average surrounding hydrophobicity. P.K. Nature 275:673-674(1978).

Abraham D.J., Leo A.J. Hydrophobicity (delta G1/2 cal). Proteins: Structure, Function and Genetics 2:130-152(1987).

Black S.D., Mould D.R. Hydrophobicity of physiological L-alpha amino acids. Anal. Biochem. 193:72-82(1991).

Bull H.B., Breese K. Hydrophobicity (free energy of transfer to surface in kcal/mole). Arch. Biochem. Biophys. 161:665-670(1974).

Fauchere J.-L., Pliska V.E. Hydrophobicity scale (pi-r). Eur. J. Med. Chem. 18:369-375(1983).

Guy H.R. Hydrophobicity scale based on free energy of transfer (kcal/mole). Biophys J. 47:61-70(1985).

Janin J. Free energy of transfer from inside to outside of a globular protein. Nature 277:491-492(1979).

Miyazawa S., Jernigen R.L. Hydrophobicity scale (contact energy derived from 3D data). Macromolecules 18:534-552(1985).

Rao M.J.K., Argos P. Membrane buried helix parameter. Biochim. Biophys. Acta 869:197-214(1986).

Roseman M.A. Hydrophobicity scale (pi-r). J. Mol. Biol. 200:513-522(1988).

Tanford C. Hydrophobicity scale (Contribution of hydrophobic interactions to the stability of the globular conformation of proteins). J. Am. Chem. Soc. 84:4240-4274(1962).

Wolfenden R.V., Andersson L., Cullis P.M., Southgate C.C.F. Hydration potential (kcal/mole) at 25C. Biochemistry 20:849-855(1981).

Wilson K.J., Honegger A., Stotzel R.P., Hughes G.J. Hydrophobic constants derived from HPLC peptide retention times. Biochem. J. 199:31-41(1981).

Parker J.M.R., Guo D., Hodges R.S. Hydrophilicity scale derived from HPLC peptide retention times. Biochemistry 25:5425-5431(1986).

Cowan R., Whittaker R.G. Hydrophobicity indices at ph 3.4 determined by HPLC. Peptide Research 3:75-80(1990).

Cowan R., Whittaker R.G. Hydrophobicity indices at ph 7.5 determined by HPLC. Peptide Research 3:75-80(1990).

Examples

data(H)