protFP: Compute the protFP descriptors of a protein sequence
Description
The ProtFP descriptor set was constructed from a large initial selection of indices obtained from the AAindex database for all 20 naturally occurring amino acids.
Usage
protFP(seq)
Value
The computed average of protFP descriptors of all the amino acids in the corresponding peptide sequence.
Arguments
seq
An amino-acids sequence
References
van Westen, G. J., Swier, R. F., Wegner, J. K., IJzerman, A. P., van Vlijmen, H. W., & Bender, A. (2013). Benchmarking of protein descriptor sets in proteochemometric modeling (part 1): comparative study of 13 amino acid descriptor sets. Journal of cheminformatics, 5(1), 41.