PhenStat (version 2.6.0)

boxplotResidualBatch: Method "boxplotResidualBatch"

Description

Graph function for the Mixed Model framework's results. Creates a box plot with residue versus batch split by genotype.

Usage

boxplotResidualBatch(phenTestResult,outputMessages=TRUE)

Arguments

phenTestResult

instance of the PhenTestResult class that comes from the function testDataset; mandatory argument

outputMessages

flag: "FALSE" value to suppress output messages; "TRUE" value to show output messages; default value TRUE

References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410 West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

See Also

PhenList and PhenTestResult

Examples

    file <- system.file("extdata", "test1.csv", package="PhenStat")
    test <- PhenList(dataset=read.csv(file),
            testGenotype="Sparc/Sparc")
    result <- testDataset(test,
            depVariable="Lean.Mass")
    boxplotResidualBatch(result)