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PhenStat (version 2.6.0)

generateGraphs: Method "generateGraphs"

Description

Function generates graphs for the Mixed Model and Time as Fixed Effect frameworks' results and stores generated graphs in the defined directory.

Usage

generateGraphs(phenTestResult, dir, graphingName=NULL, type="Xlib")

Arguments

phenTestResult
instance of the PhenTestResult class that comes from the function testDataset; mandatory argument
dir
directory where to store generated graphs; mandatory argument
graphingName
a character string defining the name to be used on the graph for the dependent variable; defaults to NULL then the depVariable name will be plotted
type
character string, one of "Xlib" or "quartz" (some OS X builds) or "cairo", or "window", or cairo-png"; mandatory argument

References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410 West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

See Also

PhenTestResult