PhenStat (version 2.6.0)

testFinalLRModel: Method "testFinalLRModel"

Description

Performs diagnostic tests for Logistic Regression model quality of fit. There are no arguments checks assuming that function is called internally from the "finalLRModel" function. Otherwise should be used with precaution.

Usage

testFinalLRModel(phenTestResult)

Arguments

phenTestResult

instance of the PhenTestResult class that comes from the function testDataset ; mandatory argument

Value

Returns a vector with model fitting results

References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410 West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

See Also

PhenTestResult

Examples

    file <- system.file("extdata", "testLR.csv", package="PhenStat")
    testLR <- PhenList(dataset=read.csv(file),
            testGenotype="Mock")
    testLR2 <- LRDataset(testLR,"V2")
    resultLR <- testDataset(testLR2,
            depVariable="V2",
            method="LR")
    testFinalLRModel(resultLR)