PhenStat (version 2.6.0)

vectorOutputMatrices: Method "vectorOutputMatrices"

Description

Returns count matrices from Fisher Exact Test framework in a vector form. Note: Maximal supported number of dependent variable levels is 10.

Usage

vectorOutputMatrices(phenTestResult,outputMessages=TRUE)

Arguments

phenTestResult

instance of the PhenTestResult class that comes from the function testDataset; mandatory argument

outputMessages

flag: "FALSE" value to suppress output messages; "TRUE" value to show output messages; default value TRUE

Value

Returns a vector with count values.

References

Karp N, Melvin D, Sanger Mouse Genetics Project, Mott R (2012): Robust and Sensitive Analysis of Mouse Knockout Phenotypes. PLoS ONE 7(12): e52410. doi:10.1371/journal.pone.0052410 West B, Welch K, Galecki A (2007): Linear Mixed Models: A practical guide using statistical software New York: Chapman & Hall/CRC 353 p.

See Also

PhenTestResult

Examples

    file <- system.file("extdata", "test_categorical.csv", package="PhenStat")
    test <- PhenList(dataset=read.csv(file),
            testGenotype="Aff3/Aff3")
    result <- testDataset(test,
            depVariable="Thoracic.Processes",
            method="FE")  
    vectorOutputMatrices(result)