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PoiClaClu (version 1.0.2.1)

Classification and Clustering of Sequencing Data Based on a Poisson Model

Description

Implements the methods described in the paper, Witten (2011) Classification and Clustering of Sequencing Data using a Poisson Model, Annals of Applied Statistics 5(4) 2493-2518.

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Version

Install

install.packages('PoiClaClu')

Monthly Downloads

627

Version

1.0.2.1

License

GPL-2

Maintainer

Daniela Witten

Last Published

January 4th, 2019

Functions in PoiClaClu (1.0.2.1)

ColorDendrogram

Color the leaves in a hierarchical clustering dendrogram
PoiClaClu-internal

Internal PoiClaClu functions
Classify

Classify observations using a Poisson model.
Classify.cv

Function to do cross-validation for Poisson classification.
PoiClaClu-package

Classification and clustering of RNA sequencing data using a Poisson model
PoissonDistance

Given a n-by-p data matrix, compute the corresponding n-by-n Poisson dissimilarity matrix.
FindBestTransform

Find the power transformation that makes a data set approximately Poisson.
CountDataSet

Generate a simulated sequencing data set using a negative binomial model.