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R/PolyPatEx - Paternity Exclusion in Autopolyploid Species

R functions to perform paternity exclusion via allele matching, in autopolyploid species having ploidy 4, 6, or 8. The marker data used can be genotype data (copy numbers known) or 'allelic phenotype' data (copy numbers not known). Species considered can be dioecious or monoecious - if monoecious, selfing and non-selfing can be handled

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Version

Install

install.packages('PolyPatEx')

Monthly Downloads

173

Version

0.9.2

License

GPL-3 + file LICENSE

Maintainer

Alexander Zwart

Last Published

April 11th, 2016

Functions in PolyPatEx (0.9.2)

PolyPatEx-package

Polyploid paternity exclusion by allele matching.
potentialFatherCounts

Count potential fathers
genotPPE

Simple paternity exclusion for genotype allele data
foreignAlleles

Identify foreign alleles
convertToPhenot

Convert a genotype allele dataset to a phenotype dataset
inputData

Read in, check and preprocess the allele dataset
potentialFatherIDs

Identify potential fathers
GF_Phenotype

Example phenotype allele dataset
phenotPPE

Simple paternity exclusion for phenotype allele data
multilocusTypes

Genotype summaries
preprocessData

Check and preprocess an allele dataset
FR_Genotype

Example genotype allele dataset
fixCSV

Tidy a comma separated value (CSV) file