snp_file

<p>A .SNP file stored in the directory "data" of the PopGenome package.
The file contains variant calls for exactly one individual.
Put all files (individuals of interest) into one folder (for example "SNP").
<code>readSNP("SNP",CHR=1)</code></p>

datasets

Provides efficient tools for population genomics data analysis,
able to process individual loci, large sets of loci, or whole genomes. PopGenome <DOI:10.1093/molbev/msu136> not only
implements a wide range of population genetics statistics, but also facilitates the easy
implementation of new algorithms by other researchers. PopGenome is optimized for speed via
the seamless integration of C code.

Bastian Pfeifer

PopGenome

An Efficient Swiss Army Knife for Population Genomic Analyses

Ulrich Wittelsbuerger

Heng Li

Bob Handsaker

snp_file function

.SNP file (variant call data from 1001 Arabidopsis Genomes project) — snp_file

.SNP file (variant call data from 1001 Arabidopsis Genomes project)

snp_file: .SNP file (variant call data from 1001 Arabidopsis Genomes project)

Description

Arguments