PopGenome (version 2.7.2)

split_data_into_GFF_features: Split the data into GFF features

Description

Splits the data into GFF feautures defined by the user.

Usage

split_data_into_GFF_features(object, gff.file, chr, feature)

Arguments

object

An object of class GENOME

gff.file

The corresponding GFF file

chr

The chromosome/scaffold identifier

feature

The feature used for splitting

Value

The returned value is an object of class "GENOME" See [e-mail] and [e-mail] after splitting the data.

Details

The algorithm splits the data into features. A feature can be "gene", "exon" etc. depending on what is specified in the GFF3 file.

Examples

# NOT RUN {
# GENOME.class <- readVCF("chr1.vcf.gz",1000,"1",1,100000)
# GENOME.class.split <- split_data_into_GFF_features(GENOME.class,"Homo_sapiens.GRCh37.73.gtf", 
# "1", "gene")
# [e-mail]
# }