vcf_file

<p>A VCF file stored in the directory "data" of the PopGenome package.
The file (unpacked) has to be stored in a folder (for example "VCF").
Note that many VCF-files can be stored in this folder and are read consecutively. If the 
VCF file is too large to fit into the computer's main memory, split it into chunks (by position) !
PopGenome is able to concatenate these chunks afterwards.
<code>readData("VCF",format="VCF",FAST=TRUE)</code></p>

datasets

Provides efficient tools for population genomics data analysis,
able to process individual loci, large sets of loci, or whole genomes. PopGenome <DOI:10.1093/molbev/msu136> not only
implements a wide range of population genetics statistics, but also facilitates the easy
implementation of new algorithms by other researchers. PopGenome is optimized for speed via
the seamless integration of C code.

Bastian Pfeifer

PopGenome

An Efficient Swiss Army Knife for Population Genomic Analyses

Ulrich Wittelsbuerger

Heng Li

Bob Handsaker

vcf_file function

VCF file (subdirectory "data") — vcf_file

VCF file (subdirectory "data")

vcf_file: VCF file (subdirectory "data")

Description

Arguments