PopGenome (version 2.7.5)

count.unknowns-methods: Calculate missing nucleotide frequencies

Description

A generic function to calculate the missing nucleotide frequencies.

Usage

# S4 method for GENOME
count.unknowns(object)

Arguments

object

An object of class "GENOME"

Value

Returned value is a modified object of class "GENOME"

The slot [e-mail] for the missing frequencies for the whole region. The slot [e-mail]@missing.freqs for the missing frequencies for each SNP in a given region

Examples

# NOT RUN {
# GENOME.class <- readData("VCF", format="VCF", include.unknown=TRUE)
# [e-mail]
# GENOME.class <- count.unknowns(GENOME.class)
# [e-mail]
# [e-mail]@missing.freqs

# }