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PredCRG (version 1.0.2)

Computational Prediction of Proteins Encoded by Circadian Genes

Description

A computational model for predicting proteins encoded by circadian genes. The support vector machine has been employed with Laplace kernel for prediction of circadian proteins, where compositional, transitional and physico-chemical features were utilized as numeric features. User can predict for the test dataset using the proposed computational model. Besides, the user can also build their own training model using their training dataset, followed by prediction for the test set.

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Version

Install

install.packages('PredCRG')

Monthly Downloads

152

Version

1.0.2

License

GPL (>= 2)

Maintainer

Prabina Meher

Last Published

December 11th, 2020

Functions in PredCRG (1.0.2)

model4

Trained model with the Q4 dataset.
model2

Trained model with the Q2 dataset.
PredCRG_Enc

Encoding of protein sequence data in to numeric feature vector based on PredCRG features.
PredCRG_training

Training of the PredCRG model using the user supplied sequence dataset.
model1

Trained model with the Q1 dataset.
model3

Trained model with the Q3 dataset.
test

Test dataset.
PredCRG

Prediction of circadian proteins using the proposed PredCRG model.
PredCRG_data

Training dataset of the PredCRG model.