QBMS (version 1.0.0)

gigwa_get_samples: Get the Samples List of the Current Active GIGWA Run

Description

This function retrieves the samples list of the current active run as configured in the internal state object using the `gigwa_set_run()` function.

Usage

gigwa_get_samples()

Value

A vector of all samples in the selected run.

Author

Khaled Al-Shamaa,

See Also

set_qbms_config, gigwa_set_run

Examples

if (interactive()) {
  # Configure your GIGWA connection
  set_qbms_config("https://gigwa.southgreen.fr/gigwa/", 
                  time_out = 300, engine = "gigwa", no_auth = TRUE)

  # Select a database by name
  gigwa_set_db("Sorghum-JGI_v1")

  # Select a project by name
  gigwa_set_project("Nelson_et_al_2011")
  
  # Select a specific run by name
  gigwa_set_run("run1")
  
  # Get a list of all samples in the selected run
  samples <- gigwa_get_samples()
}