QBMS (version 1.5.0)

gigwa_get_sequences: Get the Sequences of the Current Active GIGWA Project

Description

Retrieve the list of sequences (e.g., chromosomes) associated with the currently active project in GIGWA, which has been set using the `gigwa_set_project()` function.

Usage

gigwa_get_sequences()

Value

A vector of sequence names (e.g., chromosome names) for the selected project.

Author

Khaled Al-Shamaa,

See Also

set_qbms_config, gigwa_set_project

Examples

if (interactive()) {
  set_qbms_config("https://gigwa.southgreen.fr/gigwa/", 
                  time_out = 300, engine = "gigwa", no_auth = TRUE)
  gigwa_set_db("Sorghum-JGI_v1")
  gigwa_set_project("Nelson_et_al_2011")
  chroms <- gigwa_get_sequences()
}