gmF8

pedF8

pedF8.1

pedF8.2

gmapF8

gdatF8

pdatF8

miscEx

AIL F8 data include the following:
"gmF8": A list with elements inbreeding coefficients "ib", additive genetic matrix "AA", dominance genetic matrix "DD" and other genetic matrices.
"pedF8": Pedigree data.
"pedF8.1", "pedF8.2": Alternative versions of pedigree pedF8.
"gmapF8: Genetic map.
"gdatF8": Genotype data.
"pdatF8": Phenotype data.

datasets

This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.

Riyan Cheng

QTLRel

Tools for Mapping of Quantitative Traits of Genetically Related
Individuals and Calculating Identity Coefficients from
Pedigrees

miscEx function

Genotype data, phenotype data, genetic map and pedigree. — miscEx

Genotype data, phenotype data, genetic map and pedigree.

miscEx: Genotype data, phenotype data, genetic map and pedigree.

Description

Usage

Arguments