rel2qtl

Convert the data for a QTL mapping experiment from the QTLRel format
 to that used by R/qtl (http://www.rqtl.org).

manip

This software provides tools for quantitative trait mapping in populations such as advanced intercross lines where relatedness among individuals should not be ignored. It can estimate background genetic variance components, impute missing genotypes, simulate genotypes, perform a genome scan for putative quantitative trait loci (QTL), and plot mapping results. It also has functions to calculate identity coefficients from pedigrees, especially suitable for pedigrees that consist of a large number of generations, or estimate identity coefficients from genotypic data in certain circumstances.

Riyan Cheng

QTLRel

Tools for Mapping of Quantitative Traits of Genetically Related
Individuals and Calculating Identity Coefficients from
Pedigrees

rel2qtl function

<dl> <dt>gdat</dt>
<dd>Genotype data</dd> <dt>pdat</dt>
<dd>Phenotype data</dd> <dt>gmap</dt>
<dd>Genetic map</dd></dl>

Arguments

Karl W Broman, <a href="/link/kbroman%40biostat.wisc.edu?package=QTLRel&version=1.14" data-mini-rdoc="QTLRel::kbroman@biostat.wisc.edu">kbroman@biostat.wisc.edu</a>

Author

Convert data from QTLRel to R/qtl format — rel2qtl

<dl>

 <dt>gdat</dt>
<dd>Genotype data</dd>

 <dt>pdat</dt>
<dd>Phenotype data</dd>

 <dt>gmap</dt>
<dd>Genetic map</dd>

</dl>

Karl W Broman, <a href='mailto:kbroman@biostat.wisc.edu'>kbroman@biostat.wisc.edu</a>

rel2qtl: Convert data from QTLRel to R/qtl format

Description

Usage

Value

Arguments

Author

Details

See Also

Examples