.AddSlice

internal

Calculates the number of four-taxon subtrees consistent with a pair
of cladograms, calculating the symmetric quartet distance of Bandelt & Dress
(1986), Reconstructing the shape of a tree from observed dissimilarity data,
Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>,
and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for
computing the quartet and triplet distances between binary or general trees,
Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157>
for pairs of binary trees.

Martin R. Smith

Quartet

Comparison of Phylogenetic Trees Using Quartet and Split
Measures

Andreas Sand

Gerth Stølting Brodal

Rolf Fagerberg

Thomas Mailund

Christian N. S. Pedersen

Jens Johansen

Morten K. Holt

.AddSlice function

<dl><dt>arr</dt>
<dd>Three-dimensional array.</dd>
<dt>slice</dt>
<dd>Two-dimensional matrix to add to array.</dd>
<dt>sliceName</dt>
<dd>Character vector specifying name for new slice.</dd></dl>

Arguments

<a href="https://orcid.org/0000-0001-5660-1727">Martin R. Smith</a>
(<a href="/link/martin.smith%40durham.ac.uk?package=Quartet&version=1.2.6" data-mini-rdoc="Quartet::martin.smith@durham.ac.uk">martin.smith@durham.ac.uk</a>)

Author

Add slice to 3D array — .AddSlice

<dl>

<dt>arr</dt>
<dd>Three-dimensional array.</dd>


<dt>slice</dt>
<dd>Two-dimensional matrix to add to array.</dd>


<dt>sliceName</dt>
<dd>Character vector specifying name for new slice.</dd>

</dl>

<a href='https://orcid.org/0000-0001-5660-1727'>Martin R. Smith</a>
(<a href='mailto:martin.smith@durham.ac.uk'>martin.smith@durham.ac.uk</a>)

.AddSlice: Add slice to 3D array

Description

Usage

Value

Arguments

Author