SymmetricDifferenceLineEnds

SymmetricDifferenceLines

Assumes that tree 1 is perfectly resolved, but that the resolution
of tree 2 can vary.

Calculates the number of four-taxon subtrees consistent with a pair
of cladograms, calculating the symmetric quartet distance of Bandelt & Dress
(1986), Reconstructing the shape of a tree from observed dissimilarity data,
Advances in Applied Mathematics, 7, 309-343 <doi:10.1016/0196-8858(86)90038-2>,
and using the tqDist algorithm of Sand et al. (2014), tqDist: a library for
computing the quartet and triplet distances between binary or general trees,
Bioinformatics, 30, 2079–2080 <doi:10.1093/bioinformatics/btu157>
for pairs of binary trees.

Martin R. Smith

Quartet

Comparison of Phylogenetic Trees Using Quartet and Split
Measures

Andreas Sand

Gerth Stølting Brodal

Rolf Fagerberg

Thomas Mailund

Christian N. S. Pedersen

Jens Johansen

Morten K. Holt

SymmetricDifferenceLineEnds function

<dl><dt>nsd</dt>
<dd>Vector specifying normalized symmetric differences to plot.</dd>
<dt>...</dt>
<dd>Further parameters to pass to
<code>TernaryLines()</code>.</dd></dl>

Arguments

<ul>
<li><code>SymmetricDifferenceLines()</code>: Plot the lines onto the active ternary plot.</li>
</ul>

Functions

<a href="https://orcid.org/0000-0001-5660-1727">Martin R. Smith</a>
(<a href="/link/martin.smith%40durham.ac.uk?package=Quartet&version=1.2.6" data-mini-rdoc="Quartet::martin.smith@durham.ac.uk">martin.smith@durham.ac.uk</a>)

Author

Plot contours of equal symmetric difference on a ternary plot — SymmetricDifferenceLineEnds

<dl>

<dt>nsd</dt>
<dd>Vector specifying normalized symmetric differences to plot.</dd>


<dt>...</dt>
<dd>Further parameters to pass to
<code>TernaryLines()</code>.</dd>

</dl>

<a href='https://orcid.org/0000-0001-5660-1727'>Martin R. Smith</a>
(<a href='mailto:martin.smith@durham.ac.uk'>martin.smith@durham.ac.uk</a>)

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SymmetricDifferenceLineEnds: Plot contours of equal symmetric difference on a ternary plot

Description

Usage

Value

Arguments

Functions

Author