avaSetFiltered_annot


    These are example annotations for 4 variants of an AVASet (try <code>data(avaSetFiltered)</code> to retrieve the corresponding <code>link{AVASet-class}</code> object). 
    The annotations include affected genes, exons and codons as well as resulting amino acid changes and dbSNP identifiers (if the mutation is already known).


datasets

The R453Plus1 Toolbox comprises useful functions for the
analysis of data generated by Roche's 454 sequencing platform.
It adds functions for quality assurance as well as for
annotation and visualization of detected variants,
complementing the software tools shipped by Roche with their
product. Further, a pipeline for the detection of structural
variants is provided.

HansUlrich Klein

R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome
Sequencer System

avaSetFiltered_annot function

Format

&#145;Next-generation sequencing technology reveals a characteristic
    pattern of molecular mutations in 72.8% of chronic myelomonocytic 
    leukemia by detecting frequent alterations in TET2, CBL, RAS, and RUNX1&#146; 
    (Kohlmann A et al., J Clin Oncol. 2010 Aug 20;28(24):3858-65. Epub 2010 Jul 19)

Source

These are example annotations for 4 variants of an AVASet (try <code>data(avaSetFiltered)</code> to retrieve the corresponding <code>link{AVASet-class}</code> object). 
    The annotations include affected genes, exons and codons as well as resulting amino acid changes and dbSNP identifiers (if the mutation is already known).

avaSetFiltered_annot: AVASet variant annotations

Description

Usage

Arguments

Format

Source

Examples