baseQualityHist

baseQualityHist,QualityScaledDNAStringSet-method

baseQualityHist,ShortReadQ-method

baseQualityHist,SFFContainer-method

An object of class <a rd-options="" href="/link/QualityScaledDNAStringSet?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::QualityScaledDNAStringSet">QualityScaledDNAStringSet</a>, <a rd-options="" href="/link/ShortReadQ?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::ShortReadQ">ShortReadQ</a> or 
    <a rd-options="" href="/link/SFFContainer?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::SFFContainer">SFFContainer</a>.

object

xlab

ylab

The number of breaks in the histogram (see &#145;hist&#146;).

breaks

Arguments to be passed to methods, such as graphical parameters (see &#145;par&#146;).


  Create a histogram based on the quality of every single base from all sequences.


methods

The R453Plus1 Toolbox comprises useful functions for the
analysis of data generated by Roche's 454 sequencing platform.
It adds functions for quality assurance as well as for
annotation and visualization of detected variants,
complementing the software tools shipped by Roche with their
product. Further, a pipeline for the detection of structural
variants is provided.

HansUlrich Klein

R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome
Sequencer System

baseQualityHist function

An object of class <a href="QualityScaledDNAStringSet" rd-options="">QualityScaledDNAStringSet</a>, <a href="ShortReadQ" rd-options="">ShortReadQ</a> or 
    <a href="SFFContainer" rd-options="">SFFContainer</a>.

The number of breaks in the histogram (see <sQuote>hist</sQuote>).

Arguments to be passed to methods, such as graphical parameters (see <sQuote>par</sQuote>).

Create a histogram based on the quality of every single base from all sequences.

baseQualityHist: Plot A Histogram Of The Base Qualities.

Description

Usage

Arguments