R453Plus1Toolbox (version 1.22.0)

featureDataAmp: Access the amplicon data of an AVASet

Description

Similar to featureData of the Biobase ExpressionSet, this function returns the feature data and feature meta of the amplicon slot of an instance of the AVASet.

Usage

featureDataAmp(object)

Arguments

object

An link{AVASet-class} object.

Value

The feature data of the amplicon slot contains the names, primers, start/end positions and reference sequences of all amplicons (see AVASet-class for details). The returned object is of class AnnotatedDataFrame.

See Also

fDataAmp, assayDataAmp, AVASet-class,

Examples

    # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
    data(avaSetExample)
    avaSetExample

    # show contents amplicon feature data
    featureDataAmp(avaSetExample)