homopolymerHist

homopolymerHist,SFFRead-method

An object of class <code><a rd-options="" href="/link/SFFRead?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::SFFRead">SFFRead</a></code>.

Two positions between which the flows should be plotted.

range

xlab

ylab

The colors in which the four nucleotids should be plotted.

Arguments to be passed to methods, such as graphical parameters (see &#145;par&#146;).


  This function creates a histogram for the different lengths of the homopolymer stretches with one bar
  for each nucleotide in the flow. With the height giving the number of this homopolymer stretch in the flowgram.


methods

The R453Plus1 Toolbox comprises useful functions for the
analysis of data generated by Roche's 454 sequencing platform.
It adds functions for quality assurance as well as for
annotation and visualization of detected variants,
complementing the software tools shipped by Roche with their
product. Further, a pipeline for the detection of structural
variants is provided.

HansUlrich Klein

R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome
Sequencer System

homopolymerHist function

An object of class <code><a href="SFFRead" rd-options="">SFFRead</a></code>.

Arguments to be passed to methods, such as graphical parameters (see <sQuote>par</sQuote>).

This function creates a histogram for the different lengths of the homopolymer stretches with one bar
  for each nucleotide in the flow. With the height giving the number of this homopolymer stretch in the flowgram.

homopolymerHist: Create A Histogram Of The Homopolymer Stretches

Description

Usage

Arguments