readLengthStats

readLengthStats,DNAStringSet-method

readLengthStats,ShortRead-method

readLengthStats,SFFContainer-method


    An object of class <a rd-options="" href="/link/DNAStringSet?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::DNAStringSet">DNAStringSet</a>, <a rd-options="" href="/link/ShortRead?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::ShortRead">ShortRead</a> or <a rd-options="" href="/link/SFFContainer?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::SFFContainer">SFFContainer</a>.
  

object


  This function returns the mean, median, minimum, maximum and standard deviation of the read 
  lengths over a set of sequences.


methods

The R453Plus1 Toolbox comprises useful functions for the
analysis of data generated by Roche's 454 sequencing platform.
It adds functions for quality assurance as well as for
annotation and visualization of detected variants,
complementing the software tools shipped by Roche with their
product. Further, a pipeline for the detection of structural
variants is provided.

HansUlrich Klein

R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome
Sequencer System

readLengthStats function

An object of class <a href="DNAStringSet" rd-options="">DNAStringSet</a>, <a href="ShortRead" rd-options="">ShortRead</a> or <a href="SFFContainer" rd-options="">SFFContainer</a>.

This function returns the mean, median, minimum, maximum and standard deviation of the read 
  lengths over a set of sequences.

readLengthStats: Statistics For The Read Lengths

Description

Usage

Arguments

Value