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referenceSequences: Access the reference sequences of an AVASet

Description

This function give access to a slot of an instance of the AVASet storing information about all reference sequences of the amplicons.

Usage

referenceSequences(object)

Arguments

object
An link{AVASet-class} object.

Value

The data is stored in an object of class AlignedRead and thus gives information about all reference sequences and their position on a chromosome (if alignShortReads has been called before).

See Also

alignShortReads

Examples

Run this code

    # load an AVA dataset containing 6 samples, 4 amplicons and 259 variants
    data(avaSetExample)

    referenceSequences(avaSetExample)

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