sff2fastq

sff2fastq,SFFContainer-method

An object of class <a rd-options="" href="/link/SFFContainer?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::SFFContainer">SFFContainer</a>.

The directory where the file should be stored, defaults to the current working 
    directory.

outdir

The name of the file to write. Defaults to the filename slot of the 
    <a rd-options="" href="/link/SFFContainer?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::SFFContainer">SFFContainer</a>, with .sff substituted with .fastq.

fname


  This function takes a <a rd-options="" href="/link/SFFContainer?package=R453Plus1Toolbox&version=1.22.0" data-mini-rdoc="R453Plus1Toolbox::SFFContainer">SFFContainer</a> object and writes it to a file in FASTQ format.


methods

The R453Plus1 Toolbox comprises useful functions for the
analysis of data generated by Roche's 454 sequencing platform.
It adds functions for quality assurance as well as for
annotation and visualization of detected variants,
complementing the software tools shipped by Roche with their
product. Further, a pipeline for the detection of structural
variants is provided.

HansUlrich Klein

R453Plus1Toolbox

A package for importing and analyzing data from Roche's Genome
Sequencer System

sff2fastq function

An object of class <a href="SFFContainer" rd-options="">SFFContainer</a>.

The name of the file to write. Defaults to the filename slot of the 
    <a href="SFFContainer" rd-options="">SFFContainer</a>, with .sff substituted with .fastq.

This function takes a <a href="SFFContainer" rd-options="">SFFContainer</a> object and writes it to a file in FASTQ format.

sff2fastq: Write A SFFContainer Object To A FASTQ File

Description

Usage

Arguments