cumsumPos

Function to calculate cumulative position (beyond chromosome)

By using 'RAINBOWR' (Reliable Association INference By Optimizing Weights with R), users can test multiple SNPs (Single Nucleotide Polymorphisms) simultaneously by kernel-based (SNP-set) methods. This package can also be applied to haplotype-based GWAS (Genome-Wide Association Study). Users can test not only additive effects but also dominance and epistatic effects. In detail, please check our paper on PLOS Computational Biology: Kosuke Hamazaki and Hiroyoshi Iwata (2020) <doi:10.1371/journal.pcbi.1007663>.

Kosuke Hamazaki

RAINBOWR

Genome-Wide Association Study with SNP-Set Methods

Hiroyoshi Iwata

cumsumPos function

<dl><dt>map</dt>
<dd>Data frame with the marker names in the first column. The second and third columns contain the chromosome and map position.</dd></dl>

Arguments

Function to calculate cumulative position (beyond chromosome) — cumsumPos

<dl>

<dt>map</dt>
<dd>Data frame with the marker names in the first column. The second and third columns contain the chromosome and map position.</dd>

</dl>

cumsumPos: Function to calculate cumulative position (beyond chromosome)

Description

Usage

Value

Arguments