addWellCalib: Visualizes a measure for well calibration on the RBP curve.
Description
A measure for a well calibrated model can be obtained by
grouping the predicted probabilities via deciles yielding 10 groups.
The equally collored areas belong to a specific group. When each of the two
equally collored areas are similar, the model is well calibrated.Usage
addWellCalib(obj, plot.values = TRUE, subplot.control = list(diff = TRUE),
col = shape::greycol(10L, interval = c(0.3, 1)), pos = NULL)
Arguments
obj
[RBPObj]
Data container for RBP curve. plot.values
[logical(1)]
Whether the values of the corresponding measure should be added to the plot?
Default is FALSE.
subplot.control
[list]
A named list of arguments that will be passed to barplot.
Additionally, you can set diff = TRUE to plot differences of the
equally collored areas or diff = FALSE to directly plot the areas
of the equally collored areas in juxtaposed bars. col
[character | numeric]
A specification for the the plotting color for the areas.
pos
[list]
A named List that determines the x and y positioning of a subplot that
compares the areas in additional barplots (see subplot).
Can be NA for no additional subplot.
Default is pos = NULL for an auto positioning in the topleft quadrant. Value
A matrix that contains the average of the “probabilities within deciles”
conditional on Y.