RCircos.Initialize.Plot.Parameters

Non-negative integer, how many tracks will be put inside of chromosome ideogram.

tracks.inside

Non-negative integer, how many tracks will be put outside of chromosome ideogram.

tracks.outside

Setup default values for RCircos plot parameters. All parameters are held in one list. This function is for internal use only.

 methods 

A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.

RCircos.Initialize.Plot.Parameters: Initialize RCircos Plot Parameters

Description

Usage

Arguments