RCircos.Adjust.Scatter.Values

Numeric vector, the data to be plotted.

scatter.values

Numeric, minimum value of scatter data.

min.value

Numeric, maximum value of scatter data.

max.value

Non-negative numeric, height of plot track.

track.height

Non-negative nummeric, the number of sub tracks.

subtrack

Adjust scatter plot values to fit the plot track. The data with lowest value will be plot on the centre of first subtrack and the one with highest value will be on the centre of top subtrack. After this adjustment, values could be added to inside position of plot track as final plot positions. This function is mainly for internal use.

 methods 

A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.

RCircos.Adjust.Scatter.Values: Adjust Scatter Plot Data to Fit the Data Track

Description

Usage

Arguments