RCircos.Get.Start.End.Locations

Data frame returned from RCircos.Get.Single.Point.Positions() and the last column is the plot locations

plot.data

Non-negative integer in number of base pairs, e.g., width or heatmap or histogram of each data points

plot.width

Generate start and end positions from single point for special plot types such as heatmap, histogram, or rectangle-like which need start and end positions along the track. This function is mainly for internal use.

 methods 

A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.

RCircos.Get.Start.End.Locations: Calculate Start and End Positions for Plot Data

Description

Usage

Arguments