RCy3 (version 1.2.0)

CytoscapeConnectionClass-class: Class "CytoscapeConnectionClass"

Description

A class providing access to operations of the Cytoscape application which are not specific to a particular window.

Slots

uri:

An attrData, the address of the Cytoscape server.

Methods

ping

version

getWindowcount

getWindowID

getWindowCount

getWindowList

destroyWindow

destroyAllWindows

getNodeShapes

getAttributeClassNames

getLineStyles

getArrowShapes

haveNodeAttribute

haveEdgeAttribute

copyNodeAttributesFromCyGraph

copyEdgeAttributesFromCyGraph

getGraphFromCyWindow

hidePanel

dockPanel

floatPanel

Examples

  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())
  # create a CytoscapeConnectionClass object by calling the constructor
  cy <- CytoscapeConnection (host='localhost', port=1234)