RCy3 (version 1.2.0)

setDefaultNodeShape: setDefaultNodeShape

Description

For all CytoscapeWindows, specify the default node shape.

Usage

setDefaultNodeShape(obj, new.shape, vizmap.style.name = "default")

Arguments

obj

a CytoscapeConnectionClass object.

new.shape

a String object, one of the permissible values (see getNodeShapes).

vizmap.style.name

a String object.

Value

None.

See Also

getNodeShapes setDefaultNodeShape setDefaultNodeColor setDefaultNodeSize setDefaultNodeColor setDefaultNodeBorderColor setDefaultNodeBorderWidth setDefaultNodeFontSize setDefaultNodeLabelColor setDefaultEdgeLineWidth setEdgeColorRule setNodeBorderColorRule

Examples

  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setDefaultNodeShape.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork (cw, 'grid')
  legal.shapes <- getNodeShapes (cw)
  #stopifnot ('DIAMOND' %in% legal.shapes)
  setDefaultNodeShape (cw, 'DIAMOND')
  # redraw (cw) --> not required anymore