RCy3 (version 1.2.0)

setEdgeLineStyleRule: specify the line styles to be used in drawing edges

Description

Specify how data attributes -- for the specified named attribute -- are mapped to edge line style.

Usage

setEdgeLineStyleRule(obj, edge.attribute.name, attribute.values, line.styles, default.style='SOLID')

Arguments

obj

a CytoscapeWindowClass object.

edge.attribute.name

the edge attribute whose values will determine the line style of each edge when this rule is applied.

attribute.values

A list of scalar, discrete values. For instance, interaction types: 'phosphorylates', 'ubiquinates', 'represses', 'activates'

line.styles

One line style for each of the attribute.values

default.style

The style to use when an explicit mapping is not provided.

Value

None.

See Also

getLineStyles setNodeBorderColorRule (detailed example)

Examples

  # first, delete existing windows to save memory:
  deleteAllWindows(CytoscapeConnection())

  cw <- CytoscapeWindow ('setEdgeLineStyleRule.test', graph=makeSimpleGraph())
  displayGraph (cw)
  layoutNetwork (cw, 'force-directed')
  line.styles <- c('SINEWAVE', 'DOT', 'PARALLEL_LINES')
  edgeType.values <- c('phosphorylates', 'synthetic lethal', 'undefined')
  setEdgeLineStyleRule (cw, 'edgeType', edgeType.values, line.styles)