annotationTable1: DAVID's website functional annotation table example files
Description
These datasets correspond to the Functional Annotation
Table report obtained in the Database for Annotation,
Visualization and Integrated Discovery (DAVID) website,
using as input file, the ones provided for demo purposes
(demoList1 or demoList2) for GOTERM_BP_ALL, GOTERM_MF_ALL
and GOTERM_CC_ALL categories. No statistical analysis is
performed on these results.
Usage
data(annotationTable1)
data(annotationTable2)
Format
annotationTable1/2 are data.frame for demoList1/2 input ids,
respectively, with the following columns.
- Gene
- Three Columns with the same data included in Gene List Report
(ID, Gene.Name and Species) but coding for DAVID ID, i. e., comma separated
character with input ids if, two or more stands for the same gene.
- Annotation
- As many columns as Annotation Categories were used.
In each column, a comma separated style is use to delimitate the different
terms where is evidence reported for DAVID ID record.
References
- The Database for Annotation,
Visualization and Integrated Discovery
(davidgeneList.abcc.ncifcrf.gov)
- Huang, D.
W.; Sherman, B. T.; Tan, Q.; Kir, J.; Liu, D.; Bryant,
D.; Guo, Y.; Stephens, R.; Baseler, M. W.; Lane, H. C.;
Lempicki, R. A. DAVID Bioinformatics Resources: expanded
annotation database and novel algorithms to better
extract biology from large gene lists. Nucleic Acids Res,
Laboratory of Immunopathogenesis and Bioinformatics,
SAIC-Frederick, Inc., National Cancer Institute at
Frederick, MD 21702, USA., 2007, 35, W169-W175
-
DAVID Help page
http://david.abcc.ncifcrf.gov/helps/functional_annotation.html#EXP2