baseTemperatureType

Parent class for inner usage. Inherits: <a rd-options="" href="/link/rdmlBaseType?package=RDML&version=1.0" data-mini-rdoc="RDML::rdmlBaseType">rdmlBaseType</a>.

datasets

Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) and transforms to the appropriate formats of
the 'qpcR' and 'chipPCR' packages. Contains a dendrogram visualization
for the structure of RDML object and GUI for RDML editing.

Konstantin A Blagodatskikh

RDML

Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files

Konstantin A. Blagodatskikh

Stefan Roediger

Michal Burdukiewicz

Andrej-Nikolai Spiess

baseTemperatureType function

An <code><a rd-options="" href="/link/R6Class?package=RDML&version=1.0" data-mini-rdoc="RDML::R6Class">R6Class</a></code> generator object.

Format

<pre>baseTemperatureType$new(duration,
 temperatureChange = NULL, durationChange = NULL, measure = NULL, ramp =
 NULL)</pre>

Initialization

<dl class="dl-horizontal">
 <dt><code>duration</code></dt><dd><a rd-options="checkmate" href="/link/checkCount?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkCount">checkCount</a>. Duration of this
 step in seconds.</dd>
 <dt><code>temperatureChange</code></dt><dd><a rd-options="checkmate" href="/link/checkNumber?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkNumber">checkNumber</a>. Change
 of the temperature between two consecutive cycles: actual temperature
 = temperature + (temperatureChange * cycle counter)</dd>
 <dt><code>durationChange</code></dt><dd><a rd-options="checkmate" href="/link/checkCount?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkCount">checkCount</a>. Change of the
 duration between two consecutive cycles: actual duration = duration +
 (durationChange * cycle counter)</dd>
 <dt><code>measure</code></dt><dd><a rd-options="" href="/link/measureType?package=RDML&version=1.0" data-mini-rdoc="RDML::measureType">measureType</a>. Indicates to make a measurement
 and store it as meltcurve or real-time data.</dd>
 <dt><code>ramp</code></dt><dd><a rd-options="checkmate" href="/link/checkNumber?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkNumber">checkNumber</a>. Allowed temperature
 change between two consecutive cycles in degrees Celsius per second. If unstated,
 the maximal change rate is assumed.</dd>
 </dl>

Fields

Parent class for inner usage. Inherits: <a rd-options='' href='rdmlBaseType'>rdmlBaseType</a>.

baseTemperatureType R6 class. — baseTemperatureType

An <code><a rd-options='' href='R6Class'>R6Class</a></code> generator object.

<dl class='dl-horizontal'>
 <dt><code>duration</code></dt><dd><a rd-options='checkmate' href='checkCount'>checkCount</a>. Duration of this
 step in seconds.</dd>
 <dt><code>temperatureChange</code></dt><dd><a rd-options='checkmate' href='checkNumber'>checkNumber</a>. Change
 of the temperature between two consecutive cycles: actual temperature
 = temperature + (temperatureChange * cycle counter)</dd>
 <dt><code>durationChange</code></dt><dd><a rd-options='checkmate' href='checkCount'>checkCount</a>. Change of the
 duration between two consecutive cycles: actual duration = duration +
 (durationChange * cycle counter)</dd>
 <dt><code>measure</code></dt><dd><a rd-options='' href='measureType'>measureType</a>. Indicates to make a measurement
 and store it as meltcurve or real-time data.</dd>
 <dt><code>ramp</code></dt><dd><a rd-options='checkmate' href='checkNumber'>checkNumber</a>. Allowed temperature
 change between two consecutive cycles in degrees Celsius per second. If unstated,
 the maximal change rate is assumed.</dd>
 </dl>

baseTemperatureType: baseTemperatureType R6 class.

Description

Usage

Arguments

Format

Initialization

Fields