targetType

A target is a PCR reaction with defined set of primers. PCR reactions
for the same gene with distinct primer sequences are considered different
targets. Inherits:
<a rd-options="" href="/link/rdmlBaseType?package=RDML&version=1.0" data-mini-rdoc="RDML::rdmlBaseType">rdmlBaseType</a>.

datasets

Imports real-time thermo cycler (qPCR) data from Real-time PCR
Data Markup Language (RDML) and transforms to the appropriate formats of
the 'qpcR' and 'chipPCR' packages. Contains a dendrogram visualization
for the structure of RDML object and GUI for RDML editing.

Konstantin A Blagodatskikh

RDML

Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format
Files

Konstantin A. Blagodatskikh

Stefan Roediger

Michal Burdukiewicz

Andrej-Nikolai Spiess

targetType function

An <code><a rd-options="" href="/link/R6Class?package=RDML&version=1.0" data-mini-rdoc="RDML::R6Class">R6Class</a></code> generator object.

Format

<pre>targetType$new(id, description = NULL,
 documentation = NULL, xRef = NULL, type, amplificationEfficiencyMethod =
 NULL, amplificationEfficiency = NULL, amplificationEfficiencySE = NULL,
 detectionLimit = NULL, dyeId, sequences = NULL, commercialAssay = NULL)</pre>

Initialization

<dl class="dl-horizontal">
<dt><code>id</code></dt><dd><a rd-options="" href="/link/idType?package=RDML&version=1.0" data-mini-rdoc="RDML::idType">idType</a>.</dd>
 <dt><code>description</code></dt><dd><a rd-options="checkmate" href="/link/checkString?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkString">checkString</a>.</dd>
 <dt><code>documentation</code></dt><dd><code>list</code> of <a rd-options="" href="/link/idReferencesType?package=RDML&version=1.0" data-mini-rdoc="RDML::idReferencesType">idReferencesType</a>.</dd>
 <dt><code>xRef</code></dt><dd><code>list</code> of <a rd-options="" href="/link/xRefType?package=RDML&version=1.0" data-mini-rdoc="RDML::xRefType">xRefType</a>.</dd>
 <dt><code>type</code></dt><dd><a rd-options="" href="/link/targetTypeType?package=RDML&version=1.0" data-mini-rdoc="RDML::targetTypeType">targetTypeType</a>.</dd>
 <dt><code>amplificationEfficiencyMethod</code></dt><dd><a rd-options="checkmate" href="/link/checkString?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkString">checkString</a>.</dd>
 <dt><code>amplificationEfficiency</code></dt><dd><a rd-options="checkmate" href="/link/checkNumber?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkNumber">checkNumber</a>.</dd>
 <dt><code>amplificationEfficiencySE</code></dt><dd><a rd-options="checkmate" href="/link/checkNumber?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkNumber">checkNumber</a>.</dd>
 <dt><code>detectionLimit</code></dt><dd><a rd-options="checkmate" href="/link/checkNumber?package=RDML&version=1.0&to=checkmate" data-mini-rdoc="checkmate::checkNumber">checkNumber</a>.</dd>
 <dt><code>dyeId</code></dt><dd><a rd-options="" href="/link/idReferencesType?package=RDML&version=1.0" data-mini-rdoc="RDML::idReferencesType">idReferencesType</a>.</dd>
 <dt><code>sequences</code></dt><dd><a rd-options="" href="/link/sequencesType?package=RDML&version=1.0" data-mini-rdoc="RDML::sequencesType">sequencesType</a>.</dd>
 <dt><code>commercialAssay</code></dt><dd><a rd-options="" href="/link/commercialAssayType?package=RDML&version=1.0" data-mini-rdoc="RDML::commercialAssayType">commercialAssayType</a>.</dd> </dl>

Fields

A target is a PCR reaction with defined set of primers. PCR reactions
for the same gene with distinct primer sequences are considered different
targets. Inherits:
<a rd-options='' href='rdmlBaseType'>rdmlBaseType</a>.

targetType R6 class. — targetType

An <code><a rd-options='' href='R6Class'>R6Class</a></code> generator object.

<dl class='dl-horizontal'>
<dt><code>id</code></dt><dd><a rd-options='' href='idType'>idType</a>.</dd>
 <dt><code>description</code></dt><dd><a rd-options='checkmate' href='checkString'>checkString</a>.</dd>
 <dt><code>documentation</code></dt><dd><code>list</code> of <a rd-options='' href='idReferencesType'>idReferencesType</a>.</dd>
 <dt><code>xRef</code></dt><dd><code>list</code> of <a rd-options='' href='xRefType'>xRefType</a>.</dd>
 <dt><code>type</code></dt><dd><a rd-options='' href='targetTypeType'>targetTypeType</a>.</dd>
 <dt><code>amplificationEfficiencyMethod</code></dt><dd><a rd-options='checkmate' href='checkString'>checkString</a>.</dd>
 <dt><code>amplificationEfficiency</code></dt><dd><a rd-options='checkmate' href='checkNumber'>checkNumber</a>.</dd>
 <dt><code>amplificationEfficiencySE</code></dt><dd><a rd-options='checkmate' href='checkNumber'>checkNumber</a>.</dd>
 <dt><code>detectionLimit</code></dt><dd><a rd-options='checkmate' href='checkNumber'>checkNumber</a>.</dd>
 <dt><code>dyeId</code></dt><dd><a rd-options='' href='idReferencesType'>idReferencesType</a>.</dd>
 <dt><code>sequences</code></dt><dd><a rd-options='' href='sequencesType'>sequencesType</a>.</dd>
 <dt><code>commercialAssay</code></dt><dd><a rd-options='' href='commercialAssayType'>commercialAssayType</a>.</dd> </dl>

targetType: targetType R6 class.

Description

Usage

Arguments

Format

Initialization

Fields