data.frame with reference RFLP data; see refDataGerm.
maxValue
numeric: maximum value for which the error bound is applied.
Can be a vector of length larger than 1.
errorBound
numeric: error bound corresponding to maxValue.
Can be a vector of length larger than 1.
weight
numeric: weight for weighting partial matches; see details section.
na.rm
logical: indicating whether NA values should be stripped before the
computation proceeds.
Value
A character matrix with entries of the form "a_b" which means that there
were a out of b possible matches.
Details
A rather simple algorithm which consists of counting the number of matches where
it is considered a match if the value is inside a range of +/- errorBound.
If there is more than one enzyme, one can use weights to give the partial perfect
matches for a certain enzyme a higher (or also smaller) weight.
References
T. A. Saari, S. K. Saari, C. D. Campbell, I. J Alexander, I. C. Anderson.
FragMatch - a program for the analysis of DNA fragment data.
Mycorrhiza 2007, 17:133-136