GraphSpace-class

GraphSpace: An S4 class for PathwaySpace graphics

Interface to integrate 'igraph' and 'ggplot2' graphics within spatial maps. 'RGraphSpace' implements new geometric objects using 'ggplot2' prototypes, customized for representing large 'igraph' objects in a normalized coordinate system. By scaling shapes and graph elements, 'RGraphSpace' can provide a framework for layered visualizations.

Mauro Castro

RGraphSpace

A Lightweight Interface Between 'ggplot2' and 'igraph' Objects

Victor Apolonio

Vinicius Chagas

GraphSpace-class function

<dl>
<dt><code>nodes</code></dt>
<dd>A data frame with xy-vertex coordinates.</dd></dl>
<dt><code>edges</code></dt>
<dd>A data frame with edges.</dd>
<dt><code>graph</code></dt>
<dd>An igraph object.</dd>
<dt><code>pars</code></dt>
<dd>A list with parameters.</dd>
<dt><code>misc</code></dt>
<dd>A list with intermediate objects for downstream methods.</dd>

Slots

see <code>GraphSpace</code> constructor.

Constructor

GraphSpace: An S4 class for PathwaySpace graphics — GraphSpace-class

<dl>
<dt><code>nodes</code></dt>
<dd>A data frame with xy-vertex coordinates.</dd>


<dt><code>edges</code></dt>
<dd>A data frame with edges.</dd>


<dt><code>graph</code></dt>
<dd>An igraph object.</dd>


<dt><code>pars</code></dt>
<dd>A list with parameters.</dd>


<dt><code>misc</code></dt>
<dd>A list with intermediate objects for downstream methods.</dd>


</dl>

see <code>GraphSpace</code> constructor.

GraphSpace-class: GraphSpace: An S4 class for PathwaySpace graphics

Description

Arguments

Value

Slots

Constructor