Learn R Programming

⚠️There's a newer version (1.0.1.2) of this package.Take me there.

RNOmni (version 1.0.1)

Rank Normal Transformation Omnibus Test

Description

Inverse normal transformation (INT) based genetic association testing. These tests are recommend for continuous traits with non-normally distributed residuals. INT-based tests robustly control the type I error in settings where standard linear regression does not, as when the residual distribution exhibits excess skew or kurtosis. Moreover, INT-based tests dominate standard linear regression in terms of power. These tests may be classified into two types. In direct INT (D-INT), the phenotype is itself transformed. In indirect INT (I-INT), phenotypic residuals are transformed. The omnibus test (O-INT) adaptively combines D-INT and I-INT into a single robust and statistically powerful approach. See McCaw ZR, Lane JM, Saxena R, Redline S, Lin X. "Operating characteristics of the rank-based inverse normal transformation for quantitative trait analysis in genome-wide association studies" .

Copy Link

Version

Install

install.packages('RNOmni')

Monthly Downloads

1,262

Version

1.0.1

License

GPL-3

Maintainer

Zachary McCaw

Last Published

August 15th, 2022

Functions in RNOmni (1.0.1)

FitOLS

Ordinary Least Squares
IINT

Indirect-INT
OINT

Omnibus-INT
OmniP

Omnibus P-value.
RNOmni-help

RNOmni: Rank-Normal Omnibus Association Testing
DINT

Direct-INT
PartitionData

Partition Data
CauchyToP

Convert Cauchy Random Variable to P
RankNorm

Rank-Normalize
PtoCauchy

Convert P-value to Cauchy Random
BasicInputChecks

Basic Input Checks
BAT

Basic Association Test