nexml_write(
x = nexml(),
file = NULL,
trees = NULL,
characters = NULL,
meta = NULL,
...
)
Value
Writes out a nexml file
Arguments
x
a nexml object, or any phylogeny object (e.g. phylo, phylo4)
that can be coerced into one. Can also be omitted, in which case a new
nexml object will be constructed with the additional parameters specified.
file
the name of the file to write out
trees
phylogenetic trees to add to the nexml file (if not already given in x)
see add_trees for details.
characters
additional characters
meta
A meta element or list of meta elements, see add_meta
...
additional arguments to add__basic_meta, such as the title. See add_basic_meta.
## Write an ape tree to nexml, analgous to write.nexus: library(ape); data(bird.orders)
ex <- tempfile(fileext=".xml")
write.nexml(bird.orders, file=ex)