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Check taxonomic names against the specified service and add appropriate semantic metadata to the nexml OTU unit containing the corresponding identifier.
taxize_nexml( nexml, type = c("ncbi", "itis", "col", "tpl", "gbif", "wd"), warnings = TRUE, ... )
a nexml object
the name of the identifier to use
should we show warning messages if no match can be found?
additional arguments to [taxadb::get_ids()]
[taxadb::get_ids()]
if (FALSE) { data(bird.orders) birds <- add_trees(bird.orders) birds <- taxize_nexml(birds, "NCBI") }
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