plot.looCV

utilities

visualization

Linear model calculations are made for many random versions of data.
Using residual randomization in a permutation procedure, sums of squares are
calculated over many permutations to generate empirical probability distributions
for evaluating model effects.  This packaged is described by
Collyer & Adams (2018).  Additionally, coefficients, statistics, fitted values, and residuals generated over many
permutations can be used for various procedures including pairwise tests, prediction, classification, and
model comparison.  This package should provide most tools one could need for the analysis of
high-dimensional data, especially in ecology and evolutionary biology, but certainly other fields, as well.

Michael Collyer

RRPP

Linear Model Evaluation with Randomized Residuals in a
Permutation Procedure

Dean Adams

plot.looCV function

<dl><dt>x</dt>
<dd>An object of class <code>looCV</code></dd>
<dt>axis1</dt>
<dd>A value indicating which component should be 
displayed as the X-axis (default = C1)</dd>
<dt>axis2</dt>
<dd>A value indicating which component should be 
displayed as the Y-axis (default = C2)</dd>
<dt>flip</dt>
<dd>An argument that if not NULL can be used to flip 
components in the plot. 
The values need to match axis1 or axis2. For example, if axis1 = 3 
and axis2 = 4, flip = 1 will not
change either axis; flip = 3 will flip only the horizontal axis; 
flip = c(3, 4) will flip both axes. Axis will only be flipped in first
plot.</dd>
<dt>...</dt>
<dd>other arguments passed to plot (helpful to employ
different colors or symbols for different groups). See</dd></dl>

Arguments

Author

Plot Function for RRPP — plot.looCV

<dl>

<dt>x</dt>
<dd>An object of class <code>looCV</code></dd>


<dt>axis1</dt>
<dd>A value indicating which component should be 
displayed as the X-axis (default = C1)</dd>


<dt>axis2</dt>
<dd>A value indicating which component should be 
displayed as the Y-axis (default = C2)</dd>


<dt>flip</dt>
<dd>An argument that if not NULL can be used to flip 
components in the plot. 
The values need to match axis1 or axis2. For example, if axis1 = 3 
and axis2 = 4, flip = 1 will not
change either axis; flip = 3 will flip only the horizontal axis; 
flip = c(3, 4) will flip both axes. Axis will only be flipped in first
plot.</dd>


<dt>...</dt>
<dd>other arguments passed to plot (helpful to employ
different colors or symbols for different groups). See</dd>

</dl>

Plot Function for RRPP

plot.looCV: Plot Function for RRPP

Description

Usage

Arguments

Author