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RTCGA (version 1.2.2)

getCNGECorrelation: Perform correlation analysis betwwen gene expression and copy number data

Description

getCNGECorrelation returns a list that stores the results correlation between gene expression and copy number data.

Usage

getCNGECorrelation(dataObject, adj.method = "BH", adj.pval = 0.05,
  raw.pval = 0.05)

Arguments

dataObject
This must be FirehoseData object.
adj.method
Raw p value adjustment methods (Default "BH")
adj.pval
Adjusted p value cut off for results table (Default 0.05)
raw.pval
raw p value cut off for results table (Default 0.05)

Value

  • Returns a list that stores results for each dataset

Examples

Run this code
data(RTCGASample)
corRes = getCNGECorrelation(RTCGASample)
corRes
showResults(corRes[[1]])

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