installTCGA

A character specifing the names of the data packages to be installed. By default installs all packages.

packages

build_vignettes

Further arguments passed to <a rd-options="devtools" href="/link/install_github?package=RTCGA&version=1.2.2&to=devtools" data-mini-rdoc="devtools::install_github">install_github</a>.


Function installs data packages from <a href="https://github.com/RTCGA/">https://github.com/RTCGA/</a>. Packages are listed <a rd-options="" href="/link/datasetsTCGA?package=RTCGA&version=1.2.2" data-mini-rdoc="RTCGA::datasetsTCGA">datasetsTCGA</a>.


The Cancer Genome Atlas (TCGA) Data Portal provides a
platform for researchers to search, download, and analyze data
sets generated by TCGA. It contains clinical information,
genomic characterization data, and high level sequence analysis
of the tumor genomes. The key is to understand genomics to
improve cancer care. RTCGA package offers download and
integration of the variety and volume of TCGA data using
patient barcode key, what enables easier data possession. This
may have an benefcial infuence on impact on development of
science and improvement of patients' treatment. Furthermore,
RTCGA package transforms TCGA data to tidy form which is
convenient to use.

Marcin Kosinski

RTCGA

The Cancer Genome Atlas Data Integration

installTCGA function

 If you have any problems, issues or think that something is missing or is not
clear please post an issue on 
<a href="https://github.com/RTCGA/RTCGA/issues">https://github.com/RTCGA/RTCGA/issues</a>.

Issues

Further arguments passed to <a href="install_github" rd-options="devtools">install_github</a>.

Function installs data packages from <href>https://github.com/RTCGA/</href>{https://github.com/RTCGA/}. Packages are listed <a href="datasetsTCGA" rd-options="">datasetsTCGA</a>.

installTCGA: Install packages from RTCGA family

Description

Usage

Arguments

Issues

See Also

Examples