validate.pathways.db

The databse to be used for encrichment analysis. Can be one of the following, "rWikiPathways", "KEGG", "REACTOME", "Hallmark","rWikiPathways_aug_2020"

pathway.db

the customized pathways in the format of two column dataframe (column name as "gs_name" and "entrez_gene") to be used in analysis

customized.pathways

To ensure selected db name is correct.

Automate downstream visualization & pathway analysis in RNAseq analysis. 'RVA' is a collection of functions that efficiently visualize RNAseq differential expression analysis result from summary statistics tables. It also utilize the Fisher's exact test to evaluate gene set or pathway enrichment in a convenient and efficient manner.

validate.pathways.db: Validate Pathways DB

Description

Usage

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References