get.cutoff.df

Dataframe from plot_cutoff_single.

datin

A set of p-values for FDR cutoff to be checked.

pvalues

A set of fold change cutoff to be checked.

The column name of the log2FC in the summary statistics table.

FCflag

The column name of the False Discovery Rate (FDR) in the summary statistics table.

FDRflag

This function processes dataframe from plot_cutoff_single function
and produces a ggplot object which depicts the number of differntially expressed
genes with different FDR and fold change cutoff.

Automate downstream visualization & pathway analysis in RNAseq analysis. 'RVA' is a collection of functions that efficiently visualize RNAseq differential expression analysis result from summary statistics tables. It also utilize the Fisher's exact test to evaluate gene set or pathway enrichment in a convenient and efficient manner.

get.cutoff.df: Create ggplot object for number of differntially expressed genes with different FDR and fold change cutoff.

Description

Usage

Arguments